Understanding Food Allergy

The 10 Big Discoveries


Ten discoveries created a clearer path forward. FASI-supported discoveries are changing how researchers understand food allergy: where it begins, what intensifies a reaction, and how protection may develop. Each advance opens new questions and new possibilities for treatment. Together, these discoveries strengthen the science needed to pursue a cure.

What the ten discoveries reveal together

These discoveries connect five parts of the story: what the body encounters, where food meets the body, how the body decides, how the brain shapes the response, and what may help protection last.

Each finding gives researchers a more precise question to test and a new opportunity to investigate. Together, they show why understanding the connections between the body’s systems is essential to changing the course of food allergy.

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Discovery 1 | Food allergy may be a protective alarm set too high

The body has natural defenses that assess what is safe to take in and what should be avoided. FASI-supported research is revealing how food allergy may draw on this protective system. Animal studies show that an allergic response can activate immune defenses and signal the brain to avoid a food. These findings support a broader idea: food allergy may be an exaggerated defense against danger, with the alarm set too high or directed at a harmless food protein.

What this discovery made possible:

Scientists can investigate how the alarm is triggered, which signals strengthen or restrain it, and why it responds to harmless food. This opens new directions for research into changing the response at its source.

Why this matters for people with food allergy:

Understanding the allergic alarm could lead to treatments that make the body less likely to react to a harmless food.

What we know so far:

This is a scientific framework, not a complete explanation for every person or form of food allergy. Key evidence comes from animal studies.

  • Immune sensing of food allergens promotes avoidance behaviour

    In addition to its canonical function of protection from pathogens, the immune system can also alter behaviour. The scope and mechanisms of behavioural modifications by the immune system are not yet well understood. Here, using mouse models of food allergy,… read more

    FASI Principal Investigator: Ruslan Medzhitov, Marcelo Dietrich, Andrew Wang, Esther Florsheim
    Nature

Food allergy crosses the boundaries between systems

The next discoveries show how the response can begin at a barrier, travel through nerves and immune signals, and influence what happens elsewhere in the body.

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Discovery 2 | Signals in the skin can help set allergy in motion

The skin is an active meeting place for immune cells, sensory nerves, and the outside world. FASI-supported research is revealing how signals there can help set allergic responses in motion. In animal studies, immune cells primed sensory nerves to respond more strongly to allergens, substances such as food proteins that can trigger allergic reactions. Separate research found that skin damage could prime an immune response to food entering through the gut, even when that food had never touched the skin. This preparation to react is called allergic sensitization.

What this discovery made possible:

These studies identify distinct ways that signals in the skin can shape allergic responses, including responses to substances encountered far from the skin itself.

Why this matters for people with food allergy:

Tracing early signals between skin, nerves, and immune cells could reveal ways to prevent food allergy before it takes hold.

What we know so far:

Much of this work comes from animal studies. Sensitization does not always lead to symptoms, and how these pathways contribute to food allergy in people still needs to be established.

  • Skin damage signals mediate allergic sensitization to spatially unlinked antigen

    Our current understanding of immunity to pathogens suggests that anatomic coupling of antigens with danger signals is a required feature for the formation of immune memory. However, in the context of pathogen-independent inflammation, the stringency of this anatomical coupling is… read more

    FASI Principal Investigator: Andrew Wang, Noah Palm, Ruslan Medzhitov
    Science Immunology
  • A γδ T cell–IL-3 axis controls allergic responses through sensory neurons

    In naive individuals, sensory neurons directly detect and respond to allergens, leading to both the sensation of itch and the activation of local innate immune cells, which initiate the allergic immune response1,2. In the setting of chronic allergic inflammation, immune… read more

    FASI Principal Investigator: Caroline Sokol
    Nature
Some signals accelerate the response.
Others apply the brake.
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Discovery 3 | Nerves can help direct T cells

Nerves carry signals such as itch and pain. They can also help direct the immune response itself. Work led by FASI investigators Vijay Kuchroo and Isaac Chiu shows how neurons, or nerve cells, influence T cells, immune cells that help guide the body’s response to a threat. In experimental studies, nerve signals including CGRP changed how T cells developed and behaved. Related work showed how sensory nerves regulate T cells in the gut, including regulatory T cells that help keep immune activity in balance.

What this discovery made possible:

The nervous system does not just react. It helps instruct immunity. These studies give researchers specific signals to investigate as potential treatment targets, opening new ways to test whether changing those signals can change the immune response.

WHY THIS MATTERS FOR PEOPLE WITH FOOD ALLERGY:

Changing the signals that guide T cells could offer new ways to prevent immune cells from driving an allergic response.

WHAT WE KNOW SO FAR:

These studies establish how nerve signals can shape immunity in experimental systems. Whether targeting them can safely prevent food-allergic reactions in people remains to be established.

  • A chemogenetic screen reveals that Trpv1-expressing neurons control regulatory T cells in the gut

    Neuroimmune cross-talk participates in intestinal tissue homeostasis and host defense. However, the matrix of interactions between arrays of molecularly defined neuron subsets and of immunocyte lineages remains unclear. We used a chemogenetic approach to activate eight distinct neuronal subsets, assessing… read more

    FASI Principal Investigator: Isaac Chiu, Stephen Liberles
    Science
  • Neuropeptide signalling orchestrates T cell differentiation

    The balance between T helper type 1 (TH1) cells and other TH cells is critical for antiviral and anti-tumour responses1-3, but how this balance is achieved remains poorly understood. Here we dissected the dynamic regulation of TH1 cell differentiation during… read more

    FASI Principal Investigator: Isaac M Chiu, Vijay K Kuchroo
    Nature
04

Discovery 4 | Nerve signals can turn allergic inflammation up or down

FASI-supported researchers identified nerve signals that give the same type of immune cell opposing instructions. These cells, called ILC2s, help drive allergic inflammation. In experimental systems, a nerve signal called NMU activated these cells and intensified inflammation. Another signal, CGRP, could restrain their activity. Like an accelerator and a brake, these signals help control the strength of the response. An imbalance may make inflammation harder to control.

What this discovery made possible:

The same type of immune cell can receive signals from nerves that increase or limit its activity. Understanding both helps researchers investigate more precise control of inflammation.

Why this matters for people with food allergy:

These findings could guide treatments that calm allergic inflammation while preserving the immune defenses people need to stay healthy.

What we know so far:

The effects of these signals depend on the cells and setting. Restoring balance is a treatment goal to investigate; these findings do not yet establish a proven therapy.

  • Calcitonin Gene-Related Peptide Negatively Regulates Alarmin-Driven Type 2 Innate Lymphoid Cell Responses

    Neuroimmune interactions have emerged as critical modulators of allergic inflammation, and type 2 innate lymphoid cells (ILC2s) are an important cell type for mediating these interactions. Here, we show that ILC2s expressed both the neuropeptide calcitonin gene-related peptide (CGRP) and… read more

    FASI Principal Investigator: Vijay Kuchroo, Isaac Chiu
    Immunity
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Discovery 5 | A cell-by-cell map reveals the gut’s nervous system

The gut has its own extensive nervous system. FASI-supported teams built a detailed map of its nerve-cell types using human samples and animal studies, distinguishing cells across different parts of the intestine. This cellular atlas gives researchers a reference for telling those cells apart. Follow-up animal studies examined how gut nerve cells respond to microbes, allergy, and infection. Related work traced signals in both directions between gut nerves and immune cells.

What this discovery made possible:

Researchers can identify which nerve-cell types and signals change in a particular condition, then investigate their role in disease and healthy gut function.

Why this matters for people with food allergy:

This map could help scientists find ways to treat food allergy while protecting the gut’s ability to function normally.

What we know so far:

The atlas includes human samples, but much of the follow-up evidence comes from animal studies. It is a research resource, not a treatment or clinical test.

  • The Human and Mouse Enteric Nervous System at Single-Cell Resolution

    The enteric nervous system (ENS) coordinates diverse functions in the intestine but has eluded comprehensive molecular characterization because of the rarity and diversity of cells. Here we develop two methods to profile the ENS of adult mice and humans at… read more

    FASI Principal Investigator: Ramnik Xavier
    Cell
The goal is not only to quiet the alarm. It is to understand what protection looks like.
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Discovery 6 | Reducing IgE signals may shape protection during treatment

IgE is an antibody, an immune protein, that helps trigger immediate allergic reactions. Researchers studied what happens when its signals are reduced before and early in oral immunotherapy (OIT), a treatment using regular, measured doses of an allergenic food under medical direction. Blood samples from people initially given the IgE-blocking medicine omalizumab showed stronger antibody activity that blocked allergic responses than samples from the placebo group. In laboratory tests, those antibodies more effectively restrained basophils, immune cells involved in reactions.

What this discovery made possible:

These findings give researchers a way to investigate how reducing IgE signals early in treatment may shape the development of protective antibodies during OIT.

WHY THIS MATTERS FOR PEOPLE WITH FOOD ALLERGY:

These findings could guide better treatment timing and combinations, helping oral immunotherapy build stronger protection against allergic reactions.

WHAT WE KNOW SO FAR:

This analysis used samples from 34 people who completed OIT in a small clinical trial. Larger studies are needed before it can guide treatment decisions. It did not establish protection after OIT ends.

  • IgE blockade during food allergen ingestion enhances the induction of inhibitory IgG antibodies

    IgE-mediated food allergy is a growing problem with no curative therapy1. Oral immunotherapy (OIT) has shown promise, but its utility is limited by reactions during treatment and a lack of sustained protection following therapy. IgE antibodies trigger hypersensitivity reactions to… read more

    FASI Principal Investigator: Hans Oettgen
    Annals of Allergy, Asthma & Immunology
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Discovery 7 | Some antibodies can help block an allergic response

Not every antibody makes food allergy worse. IgE can prepare mast cells and basophils, immune cells involved in allergic reactions, to respond to an allergen. FASI-supported studies show how other antibodies, called IgG and IgA, can help limit that response. Some block an allergen from reaching IgE. IgG can also send signals that restrain the reacting cells. This helps explain how a person may gain protection during oral immunotherapy even while an allergy test still detects IgE.

What this discovery made possible:

Researchers can look beyond IgE levels to investigate what protective antibodies do and where they act. This gives a fuller picture of how the body may resist an allergic reaction.

Why this matters for people with food allergy:

Studying protective antibodies could reveal how well treatment is protecting a patient, even when an allergy test still detects IgE.

What we know so far:

Laboratory and animal studies show these mechanisms. The presence of IgG or IgA does not guarantee lasting tolerance, the ability to tolerate a food after treatment ends. Effects depend on the antibody, its target, and where it acts.

  • IgG:FcγRIIb signals block effector programs of IgE:FcεRI-activated mast cells but spare survival pathways

    Background: IgE-induced mast cell (MC) degranulation can be inhibited by IgG antibodies, signaling via FcγRIIb, but the effects of IgG on IgE-induced MC transcription are unknown. Objective: We sought to assess inhibitory IgG:FcγRIIb effects on MC responses to IgE using… read more

    FASI Principal Investigator: Daniel Dwyer, Hans Oettgen
    Journal of Allergy and Clinical Immunology
What makes a reaction intensify?
What suggests protection may last?
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Discovery 8 | Signals in the gut can amplify a food reaction

Two animal studies revealed how the gut can help a food reaction escalate. Chemical signals called leukotrienes allowed more intact food allergen, protein that had not been broken down, to cross the intestinal lining. Related research showed that leukotrienes released by intestinal mast cells, immune cells involved in allergy, helped drive anaphylaxis, a severe, potentially life-threatening reaction.

What this discovery made possible:

Researchers can investigate how allergen movement across the gut lining and local chemical signals intensify a reaction. These findings identify additional points where a future treatment might interrupt that escalation.

Why this matters for people with food allergy:

These findings point toward future treatments that could keep a food reaction from escalating into a life-threatening emergency.

What we know so far:

The findings come from animal studies and need to be tested in people. They do not yet provide a treatment or a way to predict an individual’s reaction severity.

  • Intestinal mast cell–derived leukotrienes mediate the anaphylactic response to ingested antigens

    Anaphylaxis is a life-threatening complication of food allergen exposure. Although mechanisms governing anaphylaxis after intravenous injection are defined in mice, these models neglect mucosal exposure that accompanies ingestion. We investigated the role of mast cells within the intestine of mice… read more

    FASI Principal Investigator: Ruslan Medzhitov, Esther Florsheim
    Science
  • Cysteinyl leukotrienes stimulate gut absorption of food allergens to promote anaphylaxis in mice

    Food-specific immunoglobulin E (IgE) triggers life-threatening anaphylaxis; however, for unclear reasons, some people with food-specific IgE are asymptomatic upon allergen consumption. We studied strains of mice with different sensitivities to anaphylaxis when orally challenged with allergen to identify possible causes.… read more

    FASI Principal Investigator: Stephanie Eisenbarth
    Science
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Discovery 9 | How antibodies work may help explain protection after treatment

After peanut oral immunotherapy (OIT), some people maintained protection during a break from treatment while others did not. FASI-supported researchers found clues in IgG4, a type of antibody. Antibodies linked to more sustained protection recognized particular shapes on Ara h 2, an important peanut allergen. These antibodies more effectively blocked the allergen from activating IgE-driven reactions in immune cells. What the antibodies could do mattered beyond how many were present.

What this discovery made possible:

Researchers can examine where antibodies attach to an allergen and how effectively they block a reaction, alongside measuring their quantity. This creates new ways to investigate why protection lasts longer in some people.

Why this matters for people with food allergy:

For patients, these antibody clues could help reveal whether protection is likely to continue after peanut oral immunotherapy ends.

What we know so far:

One study assessed protection after one to three months without treatment. These are research clues, not proof of lifelong protection or a validated test for deciding when someone can stop OIT.

  • Immunotherapy-induced neutralizing antibodies disrupt allergen binding and sustain allergen tolerance in peanut allergy

    In IgE-mediated food allergies, exposure to the allergen activates systemic allergic responses. Oral immunotherapy (OIT) treats food allergies through incremental increases in oral allergen exposure. However, OIT only induces sustained clinical tolerance and decreased basophil sensitivity in a subset of… read more

    FASI Principal Investigator: Sarita Patil, Wayne Shreffler
    The Journal of Clinical Investigation
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Discovery 10 | T cells respond differently to the same treatment

Why can two people receive the same food allergy treatment and have very different outcomes? One clue may be in their T cells. FASI-supported researchers developed a way to track groups of related T cells, called clones, that recognize peanut during oral immunotherapy (OIT). T cells help direct the immune response. In people with better outcomes, OIT more strongly quieted a specific group of allergy-driving T cells. In those with less successful outcomes, broader inflammatory activity persisted.

What this discovery made possible:

Researchers can look beyond average T-cell activity to identify which groups respond to treatment and which remain active. This gives scientists a more precise way to investigate why outcomes differ from person to person.

Why this matters for people with food allergy:

These findings could help scientists tailor treatment to a person’s immune response, including people who gain less protection from oral immunotherapy.

What we know so far:

The clinical study included 12 participants, three of whom received placebo. These findings do not yet provide a validated test to predict someone’s response or guide their care. Larger studies are needed.

  • Peanut oral immunotherapy differentially suppresses clonally distinct subsets of T helper cells

    Food allergy affects an estimated 8% of children in the United States. Oral immunotherapy (OIT) is a recently approved treatment, with outcomes ranging from sustained tolerance to food allergens to no apparent benefit. The immunological underpinnings that influence clinical outcomes… read more

    FASI Principal Investigator: Wayne Shreffler, Christopher Love
    The Journal of Clinical Investigation